NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,106.4 |
| Mean read quality |
10.4 |
| Median read length |
3,127.0 |
| Median read quality |
11.3 |
| Number of reads |
17.0 |
| Read length N50 |
3,955.0 |
| STDEV read length |
1,318.0 |
| Total bases |
52,808.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
17 (100.0%) 0.1Mb |
| >Q7 |
17 (100.0%) 0.1Mb |
| >Q10 |
15 (88.2%) 0.0Mb |
| >Q12 |
3 (17.6%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.5 (2385) |
| 2 |
13.1 (2237) |
| 3 |
12.2 (4744) |
| 4 |
12.0 (5282) |
| 5 |
11.8 (3127) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5282 (12.0) |
| 2 |
4744 (12.2) |
| 3 |
4356 (10.2) |
| 4 |
4159 (11.4) |
| 5 |
4013 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot