NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,192.2 |
| Mean read quality |
10.5 |
| Median read length |
3,367.0 |
| Median read quality |
11.9 |
| Number of reads |
129.0 |
| Read length N50 |
4,023.0 |
| STDEV read length |
1,604.2 |
| Total bases |
411,790.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
129 (100.0%) 0.4Mb |
| >Q7 |
129 (100.0%) 0.4Mb |
| >Q10 |
101 (78.3%) 0.4Mb |
| >Q12 |
60 (46.5%) 0.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.6 (2636) |
| 2 |
14.4 (4571) |
| 3 |
14.3 (4038) |
| 4 |
14.2 (1847) |
| 5 |
14.2 (3081) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7242 (13.9) |
| 2 |
6406 (13.7) |
| 3 |
5862 (12.7) |
| 4 |
5752 (11.9) |
| 5 |
5497 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot