NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,380.3 |
| Mean read quality |
11.7 |
| Median read length |
3,324.0 |
| Median read quality |
12.9 |
| Number of reads |
26,082.0 |
| Read length N50 |
3,546.0 |
| STDEV read length |
974.7 |
| Total bases |
88,166,246.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
26082 (100.0%) 88.2Mb |
| >Q7 |
26082 (100.0%) 88.2Mb |
| >Q10 |
23615 (90.5%) 81.0Mb |
| >Q12 |
18073 (69.3%) 62.6Mb |
| >Q15 |
1137 (4.4%) 4.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (3102) |
| 2 |
17.0 (3987) |
| 3 |
16.9 (4153) |
| 4 |
16.8 (2578) |
| 5 |
16.8 (3401) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8738 (13.4) |
| 2 |
8706 (10.3) |
| 3 |
8694 (12.8) |
| 4 |
8364 (14.1) |
| 5 |
7868 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot