NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,524.0 |
| Mean read quality |
9.9 |
| Median read length |
3,159.0 |
| Median read quality |
11.0 |
| Number of reads |
31.0 |
| Read length N50 |
3,364.0 |
| STDEV read length |
1,577.2 |
| Total bases |
78,243.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
31 (100.0%) 0.1Mb |
| >Q7 |
31 (100.0%) 0.1Mb |
| >Q10 |
21 (67.7%) 0.1Mb |
| >Q12 |
14 (45.2%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.3 (2546) |
| 2 |
14.0 (3537) |
| 3 |
13.9 (3900) |
| 4 |
13.5 (3438) |
| 5 |
13.5 (3200) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5299 (12.6) |
| 2 |
5215 (12.5) |
| 3 |
4985 (12.7) |
| 4 |
4284 (9.0) |
| 5 |
3900 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot