NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,824.3 |
| Mean read quality |
10.6 |
| Median read length |
2,683.0 |
| Median read quality |
11.5 |
| Number of reads |
60,016.0 |
| Read length N50 |
3,014.0 |
| STDEV read length |
967.6 |
| Total bases |
169,500,330.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
60016 (100.0%) 169.5Mb |
| >Q7 |
60016 (100.0%) 169.5Mb |
| >Q10 |
49743 (82.9%) 142.3Mb |
| >Q12 |
20886 (34.8%) 61.5Mb |
| >Q15 |
25 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (3070) |
| 2 |
16.6 (3021) |
| 3 |
16.1 (2570) |
| 4 |
15.7 (1888) |
| 5 |
15.6 (3440) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10516 (9.1) |
| 2 |
10226 (12.2) |
| 3 |
10112 (12.0) |
| 4 |
9988 (12.4) |
| 5 |
9467 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot