NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,357.0 |
| Mean read quality |
10.0 |
| Median read length |
3,466.0 |
| Median read quality |
11.4 |
| Number of reads |
1,284.0 |
| Read length N50 |
4,329.0 |
| STDEV read length |
2,016.9 |
| Total bases |
4,310,425.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1284 (100.0%) 4.3Mb |
| >Q7 |
1284 (100.0%) 4.3Mb |
| >Q10 |
872 (67.9%) 3.5Mb |
| >Q12 |
485 (37.8%) 2.1Mb |
| >Q15 |
3 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (4019) |
| 2 |
15.1 (2549) |
| 3 |
15.1 (4026) |
| 4 |
14.9 (4028) |
| 5 |
14.8 (2562) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11232 (13.5) |
| 2 |
10939 (10.1) |
| 3 |
10397 (13.2) |
| 4 |
9850 (8.6) |
| 5 |
9494 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot