NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,818.2 |
| Mean read quality |
11.8 |
| Median read length |
3,826.0 |
| Median read quality |
13.0 |
| Number of reads |
1,124.0 |
| Read length N50 |
4,164.0 |
| STDEV read length |
1,299.7 |
| Total bases |
4,291,707.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1124 (100.0%) 4.3Mb |
| >Q7 |
1124 (100.0%) 4.3Mb |
| >Q10 |
1027 (91.4%) 4.0Mb |
| >Q12 |
810 (72.1%) 3.2Mb |
| >Q15 |
58 (5.2%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (4214) |
| 2 |
16.2 (5682) |
| 3 |
16.0 (4801) |
| 4 |
15.9 (3928) |
| 5 |
15.9 (3362) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7299 (9.0) |
| 2 |
7243 (13.6) |
| 3 |
7239 (13.8) |
| 4 |
7207 (13.0) |
| 5 |
7171 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot