NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,366.3 |
| Mean read quality |
10.3 |
| Median read length |
3,430.5 |
| Median read quality |
11.6 |
| Number of reads |
66.0 |
| Read length N50 |
3,789.0 |
| STDEV read length |
1,479.5 |
| Total bases |
222,178.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
66 (100.0%) 0.2Mb |
| >Q7 |
66 (100.0%) 0.2Mb |
| >Q10 |
53 (80.3%) 0.2Mb |
| >Q12 |
23 (34.8%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.8 (5740) |
| 2 |
13.7 (3574) |
| 3 |
13.5 (3842) |
| 4 |
13.4 (1622) |
| 5 |
13.3 (2014) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6452 (12.0) |
| 2 |
5740 (13.8) |
| 3 |
5692 (12.4) |
| 4 |
5523 (8.8) |
| 5 |
5511 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot