NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,844.3 |
| Mean read quality |
10.6 |
| Median read length |
3,044.0 |
| Median read quality |
12.0 |
| Number of reads |
271.0 |
| Read length N50 |
3,622.0 |
| STDEV read length |
1,589.0 |
| Total bases |
770,802.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
271 (100.0%) 0.8Mb |
| >Q7 |
271 (100.0%) 0.8Mb |
| >Q10 |
215 (79.3%) 0.7Mb |
| >Q12 |
134 (49.4%) 0.5Mb |
| >Q15 |
4 (1.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (3838) |
| 2 |
15.7 (2658) |
| 3 |
15.2 (3386) |
| 4 |
15.0 (3878) |
| 5 |
14.7 (5164) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6837 (13.9) |
| 2 |
6704 (12.4) |
| 3 |
6663 (11.8) |
| 4 |
6175 (12.8) |
| 5 |
5975 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot