NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,383.4 |
| Mean read quality |
10.5 |
| Median read length |
3,607.0 |
| Median read quality |
12.3 |
| Number of reads |
226.0 |
| Read length N50 |
4,522.0 |
| STDEV read length |
1,842.0 |
| Total bases |
764,649.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
226 (100.0%) 0.8Mb |
| >Q7 |
226 (100.0%) 0.8Mb |
| >Q10 |
168 (74.3%) 0.7Mb |
| >Q12 |
123 (54.4%) 0.5Mb |
| >Q15 |
1 (0.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (1964) |
| 2 |
15.0 (5291) |
| 3 |
14.9 (3592) |
| 4 |
14.8 (2556) |
| 5 |
14.8 (5023) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7222 (12.3) |
| 2 |
7025 (9.1) |
| 3 |
6677 (12.8) |
| 4 |
6672 (14.4) |
| 5 |
6659 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot