NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,355.8 |
| Mean read quality |
10.9 |
| Median read length |
6,233.5 |
| Median read quality |
12.2 |
| Number of reads |
196.0 |
| Read length N50 |
6,420.0 |
| STDEV read length |
2,245.4 |
| Total bases |
1,049,745.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
196 (100.0%) 1.0Mb |
| >Q7 |
196 (100.0%) 1.0Mb |
| >Q10 |
161 (82.1%) 0.9Mb |
| >Q12 |
103 (52.6%) 0.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.8 (6108) |
| 2 |
14.7 (1612) |
| 3 |
14.5 (6706) |
| 4 |
14.2 (7657) |
| 5 |
14.2 (3336) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10799 (13.4) |
| 2 |
10538 (13.4) |
| 3 |
10159 (13.7) |
| 4 |
10030 (10.4) |
| 5 |
8024 (7.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot