NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,428.1 |
| Mean read quality |
11.7 |
| Median read length |
3,457.0 |
| Median read quality |
12.7 |
| Number of reads |
324,976.0 |
| Read length N50 |
3,775.0 |
| STDEV read length |
1,131.2 |
| Total bases |
1,114,050,198.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
324976 (100.0%) 1114.1Mb |
| >Q7 |
324738 (99.9%) 1113.3Mb |
| >Q10 |
296973 (91.4%) 1029.0Mb |
| >Q12 |
209281 (64.4%) 740.0Mb |
| >Q15 |
14740 (4.5%) 53.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (2715) |
| 2 |
17.8 (3265) |
| 3 |
17.7 (739) |
| 4 |
17.7 (4301) |
| 5 |
17.6 (420) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12946 (12.1) |
| 2 |
11131 (14.2) |
| 3 |
10925 (14.0) |
| 4 |
10744 (14.8) |
| 5 |
10491 (14.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot