NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,149.3 |
| Mean read quality |
10.0 |
| Median read length |
1,968.0 |
| Median read quality |
10.8 |
| Number of reads |
3,111.0 |
| Read length N50 |
4,045.0 |
| STDEV read length |
2,041.9 |
| Total bases |
6,686,525.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3110 (100.0%) 6.7Mb |
| >Q7 |
3077 (98.9%) 6.7Mb |
| >Q10 |
1921 (61.7%) 5.9Mb |
| >Q12 |
1106 (35.6%) 4.1Mb |
| >Q15 |
73 (2.3%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (3054) |
| 2 |
17.3 (3655) |
| 3 |
17.2 (2726) |
| 4 |
17.2 (2791) |
| 5 |
17.2 (2665) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12889 (9.3) |
| 2 |
9738 (14.0) |
| 3 |
9515 (13.3) |
| 4 |
9278 (13.4) |
| 5 |
9227 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot