NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,231.4 |
| Mean read quality |
10.4 |
| Median read length |
4,075.0 |
| Median read quality |
11.4 |
| Number of reads |
6,976.0 |
| Read length N50 |
4,899.0 |
| STDEV read length |
1,943.3 |
| Total bases |
29,518,044.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6976 (100.0%) 29.5Mb |
| >Q7 |
6950 (99.6%) 29.5Mb |
| >Q10 |
5114 (73.3%) 22.7Mb |
| >Q12 |
2690 (38.6%) 12.4Mb |
| >Q15 |
76 (1.1%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (4809) |
| 2 |
16.3 (3292) |
| 3 |
16.3 (2405) |
| 4 |
16.2 (3265) |
| 5 |
16.1 (3285) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13574 (8.0) |
| 2 |
12281 (12.0) |
| 3 |
12143 (13.9) |
| 4 |
12090 (12.4) |
| 5 |
11724 (7.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot