NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,609.1 |
| Mean read quality |
11.6 |
| Median read length |
3,368.0 |
| Median read quality |
12.8 |
| Number of reads |
10,070.0 |
| Read length N50 |
4,121.0 |
| STDEV read length |
1,407.9 |
| Total bases |
36,344,088.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
10070 (100.0%) 36.3Mb |
| >Q7 |
10052 (99.8%) 36.3Mb |
| >Q10 |
9136 (90.7%) 33.3Mb |
| >Q12 |
6796 (67.5%) 25.4Mb |
| >Q15 |
111 (1.1%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (2581) |
| 2 |
16.1 (5783) |
| 3 |
15.9 (5771) |
| 4 |
15.9 (5775) |
| 5 |
15.8 (5832) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10260 (13.6) |
| 2 |
10255 (13.1) |
| 3 |
9976 (8.8) |
| 4 |
7860 (10.6) |
| 5 |
7817 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot