NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,628.8 |
| Mean read quality |
9.5 |
| Median read length |
2,969.0 |
| Median read quality |
11.1 |
| Number of reads |
104.0 |
| Read length N50 |
4,224.0 |
| STDEV read length |
2,063.4 |
| Total bases |
273,396.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
104 (100.0%) 0.3Mb |
| >Q7 |
104 (100.0%) 0.3Mb |
| >Q10 |
58 (55.8%) 0.2Mb |
| >Q12 |
29 (27.9%) 0.1Mb |
| >Q15 |
1 (1.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (3427) |
| 2 |
13.9 (3059) |
| 3 |
13.9 (4010) |
| 4 |
13.3 (3012) |
| 5 |
13.2 (4777) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7269 (9.4) |
| 2 |
6830 (11.5) |
| 3 |
6744 (11.3) |
| 4 |
6732 (12.7) |
| 5 |
6257 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot