NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,015.9 |
| Mean read quality |
11.1 |
| Median read length |
3,236.0 |
| Median read quality |
12.2 |
| Number of reads |
16,895.0 |
| Read length N50 |
3,858.0 |
| STDEV read length |
1,579.2 |
| Total bases |
50,953,425.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16895 (100.0%) 51.0Mb |
| >Q7 |
16873 (99.9%) 50.9Mb |
| >Q10 |
13522 (80.0%) 44.9Mb |
| >Q12 |
8961 (53.0%) 32.7Mb |
| >Q15 |
1679 (9.9%) 6.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.8 (5399) |
| 2 |
17.6 (1900) |
| 3 |
17.5 (1690) |
| 4 |
17.4 (6937) |
| 5 |
17.3 (3362) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9250 (10.5) |
| 2 |
9073 (14.8) |
| 3 |
8889 (8.0) |
| 4 |
8847 (12.1) |
| 5 |
8471 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot