NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,918.7 |
| Mean read quality |
11.0 |
| Median read length |
3,876.0 |
| Median read quality |
12.2 |
| Number of reads |
608,363.0 |
| Read length N50 |
4,311.0 |
| STDEV read length |
1,408.9 |
| Total bases |
2,384,001,677.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
608363 (100.0%) 2384.0Mb |
| >Q7 |
606400 (99.7%) 2377.6Mb |
| >Q10 |
491126 (80.7%) 1962.7Mb |
| >Q12 |
324479 (53.3%) 1322.3Mb |
| >Q15 |
44181 (7.3%) 184.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (6871) |
| 2 |
18.5 (3105) |
| 3 |
18.4 (2813) |
| 4 |
18.4 (3626) |
| 5 |
18.4 (3789) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14002 (11.2) |
| 2 |
13362 (7.5) |
| 3 |
12838 (8.8) |
| 4 |
12713 (10.1) |
| 5 |
12586 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot