NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,331.6 |
| Mean read quality |
11.0 |
| Median read length |
3,191.0 |
| Median read quality |
12.3 |
| Number of reads |
38,522.0 |
| Read length N50 |
3,669.0 |
| STDEV read length |
1,472.2 |
| Total bases |
128,338,468.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38522 (100.0%) 128.3Mb |
| >Q7 |
38364 (99.6%) 128.1Mb |
| >Q10 |
32319 (83.9%) 111.6Mb |
| >Q12 |
22131 (57.5%) 77.3Mb |
| >Q15 |
895 (2.3%) 3.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (2843) |
| 2 |
17.0 (3563) |
| 3 |
16.9 (4877) |
| 4 |
16.9 (3479) |
| 5 |
16.8 (1903) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54049 (7.3) |
| 2 |
40226 (11.5) |
| 3 |
34374 (10.0) |
| 4 |
33213 (11.6) |
| 5 |
28367 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot