NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,736.1 |
| Mean read quality |
11.6 |
| Median read length |
3,804.0 |
| Median read quality |
12.8 |
| Number of reads |
519,253.0 |
| Read length N50 |
4,077.0 |
| STDEV read length |
1,091.9 |
| Total bases |
1,939,968,037.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
519251 (100.0%) 1940.0Mb |
| >Q7 |
519216 (100.0%) 1940.0Mb |
| >Q10 |
460108 (88.6%) 1730.2Mb |
| >Q12 |
337985 (65.1%) 1287.1Mb |
| >Q15 |
30357 (5.8%) 118.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.6 (937) |
| 2 |
19.6 (169) |
| 3 |
18.6 (3006) |
| 4 |
18.4 (222) |
| 5 |
18.3 (3673) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12808 (8.0) |
| 2 |
10917 (11.9) |
| 3 |
10828 (8.7) |
| 4 |
10587 (9.1) |
| 5 |
10190 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot