NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,814.5 |
| Mean read quality |
11.5 |
| Median read length |
4,765.5 |
| Median read quality |
12.7 |
| Number of reads |
9,126.0 |
| Read length N50 |
5,347.0 |
| STDEV read length |
1,661.8 |
| Total bases |
43,936,970.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9126 (100.0%) 43.9Mb |
| >Q7 |
9116 (99.9%) 43.9Mb |
| >Q10 |
8090 (88.6%) 39.3Mb |
| >Q12 |
5977 (65.5%) 29.4Mb |
| >Q15 |
219 (2.4%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (2298) |
| 2 |
16.3 (7498) |
| 3 |
16.3 (3009) |
| 4 |
16.3 (3355) |
| 5 |
16.3 (3601) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11355 (8.7) |
| 2 |
10568 (8.9) |
| 3 |
10135 (8.5) |
| 4 |
9352 (13.3) |
| 5 |
9343 (14.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot