NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,506.6 |
| Mean read quality |
10.9 |
| Median read length |
3,472.0 |
| Median read quality |
11.7 |
| Number of reads |
8,998.0 |
| Read length N50 |
3,986.0 |
| STDEV read length |
1,399.9 |
| Total bases |
31,551,997.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8998 (100.0%) 31.6Mb |
| >Q7 |
8994 (100.0%) 31.5Mb |
| >Q10 |
7901 (87.8%) 28.2Mb |
| >Q12 |
3654 (40.6%) 13.6Mb |
| >Q15 |
6 (0.1%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (3649) |
| 2 |
15.7 (3478) |
| 3 |
15.4 (2536) |
| 4 |
15.1 (2375) |
| 5 |
15.1 (4688) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12216 (12.8) |
| 2 |
9392 (10.2) |
| 3 |
8432 (10.5) |
| 4 |
8243 (12.8) |
| 5 |
8138 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot