NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,035.0 |
| Mean read quality |
11.0 |
| Median read length |
3,946.0 |
| Median read quality |
12.2 |
| Number of reads |
11,553.0 |
| Read length N50 |
4,530.0 |
| STDEV read length |
1,476.2 |
| Total bases |
46,616,902.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11553 (100.0%) 46.6Mb |
| >Q7 |
11523 (99.7%) 46.5Mb |
| >Q10 |
9909 (85.8%) 40.6Mb |
| >Q12 |
6325 (54.7%) 26.6Mb |
| >Q15 |
32 (0.3%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (3603) |
| 2 |
15.8 (4073) |
| 3 |
15.6 (6165) |
| 4 |
15.6 (4618) |
| 5 |
15.5 (2843) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8286 (14.4) |
| 2 |
8265 (13.6) |
| 3 |
8257 (10.6) |
| 4 |
8252 (13.1) |
| 5 |
8241 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot