NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,983.7 |
| Mean read quality |
10.5 |
| Median read length |
2,973.0 |
| Median read quality |
11.8 |
| Number of reads |
2,943.0 |
| Read length N50 |
3,526.0 |
| STDEV read length |
1,493.9 |
| Total bases |
8,781,122.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2943 (100.0%) 8.8Mb |
| >Q7 |
2943 (100.0%) 8.8Mb |
| >Q10 |
2318 (78.8%) 7.6Mb |
| >Q12 |
1306 (44.4%) 4.4Mb |
| >Q15 |
8 (0.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (4000) |
| 2 |
15.9 (3990) |
| 3 |
15.9 (2721) |
| 4 |
15.4 (2986) |
| 5 |
15.2 (1298) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8859 (11.9) |
| 2 |
8534 (13.0) |
| 3 |
8526 (12.1) |
| 4 |
8341 (9.9) |
| 5 |
7828 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot