NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,374.1 |
| Mean read quality |
11.4 |
| Median read length |
3,191.0 |
| Median read quality |
12.6 |
| Number of reads |
24,608.0 |
| Read length N50 |
3,521.0 |
| STDEV read length |
1,051.7 |
| Total bases |
83,030,763.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24608 (100.0%) 83.0Mb |
| >Q7 |
24608 (100.0%) 83.0Mb |
| >Q10 |
21858 (88.8%) 75.4Mb |
| >Q12 |
15840 (64.4%) 55.2Mb |
| >Q15 |
482 (2.0%) 1.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (3206) |
| 2 |
17.0 (2937) |
| 3 |
16.9 (3576) |
| 4 |
16.9 (3621) |
| 5 |
16.4 (4282) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10771 (9.0) |
| 2 |
10018 (10.3) |
| 3 |
9843 (12.0) |
| 4 |
9245 (10.5) |
| 5 |
8536 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot