NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,060.8 |
| Mean read quality |
12.1 |
| Median read length |
3,983.0 |
| Median read quality |
13.4 |
| Number of reads |
66,162.0 |
| Read length N50 |
4,358.0 |
| STDEV read length |
1,289.9 |
| Total bases |
268,673,428.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
66162 (100.0%) 268.7Mb |
| >Q7 |
66036 (99.8%) 268.3Mb |
| >Q10 |
61515 (93.0%) 251.7Mb |
| >Q12 |
50725 (76.7%) 209.8Mb |
| >Q15 |
5752 (8.7%) 24.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (4310) |
| 2 |
17.2 (3389) |
| 3 |
17.1 (3114) |
| 4 |
17.1 (5367) |
| 5 |
17.0 (3068) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11725 (8.2) |
| 2 |
10283 (14.4) |
| 3 |
10052 (13.8) |
| 4 |
9831 (11.3) |
| 5 |
9801 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot