NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
597.0 |
| Mean read quality |
7.7 |
| Median read length |
155.0 |
| Median read quality |
7.9 |
| Number of reads |
1,982.0 |
| Read length N50 |
3,679.0 |
| STDEV read length |
1,263.2 |
| Total bases |
1,183,325.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1982 (100.0%) 1.2Mb |
| >Q7 |
1982 (100.0%) 1.2Mb |
| >Q10 |
185 (9.3%) 0.7Mb |
| >Q12 |
67 (3.4%) 0.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.8 (4274) |
| 2 |
14.5 (5736) |
| 3 |
14.1 (4658) |
| 4 |
14.0 (4818) |
| 5 |
13.9 (4578) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8490 (8.2) |
| 2 |
6946 (13.3) |
| 3 |
6601 (8.6) |
| 4 |
6494 (8.6) |
| 5 |
6300 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot