NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,822.4 |
| Mean read quality |
11.2 |
| Median read length |
3,791.5 |
| Median read quality |
12.3 |
| Number of reads |
3,222.0 |
| Read length N50 |
4,442.0 |
| STDEV read length |
1,455.8 |
| Total bases |
12,315,729.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3222 (100.0%) 12.3Mb |
| >Q7 |
3221 (100.0%) 12.3Mb |
| >Q10 |
2776 (86.2%) 10.8Mb |
| >Q12 |
1813 (56.3%) 7.1Mb |
| >Q15 |
60 (1.9%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (4099) |
| 2 |
15.9 (4444) |
| 3 |
15.8 (2204) |
| 4 |
15.8 (3763) |
| 5 |
15.8 (3695) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8231 (8.5) |
| 2 |
8081 (8.3) |
| 3 |
7996 (8.2) |
| 4 |
7973 (12.3) |
| 5 |
7961 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot