NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,301.7 |
| Mean read quality |
11.6 |
| Median read length |
4,280.0 |
| Median read quality |
12.6 |
| Number of reads |
7,977.0 |
| Read length N50 |
4,624.0 |
| STDEV read length |
1,392.6 |
| Total bases |
34,314,662.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7977 (100.0%) 34.3Mb |
| >Q7 |
7966 (99.9%) 34.3Mb |
| >Q10 |
7341 (92.0%) 31.8Mb |
| >Q12 |
5174 (64.9%) 22.7Mb |
| >Q15 |
120 (1.5%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.8 (2263) |
| 2 |
16.8 (3417) |
| 3 |
16.6 (3937) |
| 4 |
16.3 (3584) |
| 5 |
16.2 (4738) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9941 (13.7) |
| 2 |
8909 (12.5) |
| 3 |
8669 (11.3) |
| 4 |
8643 (10.3) |
| 5 |
8553 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot