NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,238.6 |
| Mean read quality |
11.1 |
| Median read length |
4,094.0 |
| Median read quality |
12.3 |
| Number of reads |
385.0 |
| Read length N50 |
4,514.0 |
| STDEV read length |
1,662.6 |
| Total bases |
1,631,864.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
385 (100.0%) 1.6Mb |
| >Q7 |
384 (99.7%) 1.6Mb |
| >Q10 |
321 (83.4%) 1.4Mb |
| >Q12 |
219 (56.9%) 1.0Mb |
| >Q15 |
7 (1.8%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.7 (2796) |
| 2 |
15.6 (3040) |
| 3 |
15.3 (3041) |
| 4 |
15.2 (5051) |
| 5 |
15.1 (3466) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7545 (8.5) |
| 2 |
7472 (13.2) |
| 3 |
7456 (10.2) |
| 4 |
7439 (10.2) |
| 5 |
7432 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot