NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,452.7 |
| Mean read quality |
11.1 |
| Median read length |
4,377.5 |
| Median read quality |
11.9 |
| Number of reads |
16,364.0 |
| Read length N50 |
5,167.0 |
| STDEV read length |
1,847.3 |
| Total bases |
72,863,466.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16362 (100.0%) 72.9Mb |
| >Q7 |
16347 (99.9%) 72.8Mb |
| >Q10 |
14278 (87.3%) 64.7Mb |
| >Q12 |
7957 (48.6%) 37.3Mb |
| >Q15 |
81 (0.5%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (6374) |
| 2 |
16.0 (4087) |
| 3 |
15.9 (3269) |
| 4 |
15.8 (346) |
| 5 |
15.8 (3447) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13800 (13.8) |
| 2 |
12962 (6.1) |
| 3 |
11632 (8.9) |
| 4 |
9697 (10.5) |
| 5 |
9590 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot