NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,595.1 |
| Mean read quality |
10.4 |
| Median read length |
3,232.0 |
| Median read quality |
11.4 |
| Number of reads |
17,751.0 |
| Read length N50 |
4,192.0 |
| STDEV read length |
1,774.2 |
| Total bases |
63,815,796.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
17751 (100.0%) 63.8Mb |
| >Q7 |
17684 (99.6%) 63.6Mb |
| >Q10 |
13046 (73.5%) 48.6Mb |
| >Q12 |
7085 (39.9%) 27.0Mb |
| >Q15 |
294 (1.7%) 1.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (3118) |
| 2 |
17.0 (4312) |
| 3 |
16.9 (2858) |
| 4 |
16.7 (4296) |
| 5 |
16.6 (3081) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13805 (9.5) |
| 2 |
12239 (10.7) |
| 3 |
10807 (13.3) |
| 4 |
9753 (7.3) |
| 5 |
9578 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot