NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,466.2 |
| Mean read quality |
11.1 |
| Median read length |
3,546.0 |
| Median read quality |
12.0 |
| Number of reads |
59,318.0 |
| Read length N50 |
4,015.0 |
| STDEV read length |
1,432.9 |
| Total bases |
205,610,189.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
59317 (100.0%) 205.6Mb |
| >Q7 |
59236 (99.9%) 205.4Mb |
| >Q10 |
51488 (86.8%) 183.4Mb |
| >Q12 |
29090 (49.0%) 107.3Mb |
| >Q15 |
531 (0.9%) 1.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (2364) |
| 2 |
17.5 (2381) |
| 3 |
17.4 (1420) |
| 4 |
17.0 (1968) |
| 5 |
17.0 (2381) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13307 (10.5) |
| 2 |
11334 (12.2) |
| 3 |
11252 (13.2) |
| 4 |
11207 (10.4) |
| 5 |
11001 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot