NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,750.1 |
| Mean read quality |
11.0 |
| Median read length |
3,676.5 |
| Median read quality |
12.6 |
| Number of reads |
3,916.0 |
| Read length N50 |
4,565.0 |
| STDEV read length |
1,848.2 |
| Total bases |
14,685,315.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3915 (100.0%) 14.7Mb |
| >Q7 |
3879 (99.1%) 14.7Mb |
| >Q10 |
3225 (82.4%) 12.9Mb |
| >Q12 |
2366 (60.4%) 9.8Mb |
| >Q15 |
123 (3.1%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (3517) |
| 2 |
17.9 (4732) |
| 3 |
17.9 (4712) |
| 4 |
17.6 (4184) |
| 5 |
17.6 (4671) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11486 (13.1) |
| 2 |
11424 (8.7) |
| 3 |
11181 (12.0) |
| 4 |
10594 (13.6) |
| 5 |
10581 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot