NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
835.8 |
| Mean read quality |
9.4 |
| Median read length |
727.0 |
| Median read quality |
10.5 |
| Number of reads |
6,362.0 |
| Read length N50 |
1,115.0 |
| STDEV read length |
653.2 |
| Total bases |
5,317,489.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6362 (100.0%) 5.3Mb |
| >Q7 |
6117 (96.1%) 5.2Mb |
| >Q10 |
3530 (55.5%) 3.5Mb |
| >Q12 |
2022 (31.8%) 2.2Mb |
| >Q15 |
70 (1.1%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (695) |
| 2 |
17.2 (1183) |
| 3 |
16.9 (1273) |
| 4 |
16.9 (1408) |
| 5 |
16.5 (1224) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9417 (7.3) |
| 2 |
7041 (11.7) |
| 3 |
6949 (13.3) |
| 4 |
6259 (8.2) |
| 5 |
5886 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot