NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,338.1 |
| Mean read quality |
11.6 |
| Median read length |
3,195.0 |
| Median read quality |
12.7 |
| Number of reads |
490,542.0 |
| Read length N50 |
3,469.0 |
| STDEV read length |
917.0 |
| Total bases |
1,637,478,937.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
490542 (100.0%) 1637.5Mb |
| >Q7 |
490542 (100.0%) 1637.5Mb |
| >Q10 |
446203 (91.0%) 1498.7Mb |
| >Q12 |
327463 (66.8%) 1111.9Mb |
| >Q15 |
10468 (2.1%) 36.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (724) |
| 2 |
17.4 (3617) |
| 3 |
17.2 (2751) |
| 4 |
17.1 (3047) |
| 5 |
17.0 (3015) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12351 (12.5) |
| 2 |
11675 (10.9) |
| 3 |
11673 (12.7) |
| 4 |
11074 (8.8) |
| 5 |
10931 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot