NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,098.5 |
| Mean read quality |
9.0 |
| Median read length |
3,279.5 |
| Median read quality |
11.3 |
| Number of reads |
814.0 |
| Read length N50 |
4,054.0 |
| STDEV read length |
1,639.1 |
| Total bases |
2,522,204.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
779 (95.7%) 2.5Mb |
| >Q7 |
678 (83.3%) 2.3Mb |
| >Q10 |
533 (65.5%) 2.0Mb |
| >Q12 |
309 (38.0%) 1.2Mb |
| >Q15 |
2 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.2 (4152) |
| 2 |
15.1 (4015) |
| 3 |
14.9 (2882) |
| 4 |
14.4 (3593) |
| 5 |
14.4 (4054) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6727 (12.2) |
| 2 |
6647 (12.2) |
| 3 |
6585 (11.5) |
| 4 |
6575 (11.1) |
| 5 |
6565 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot