NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,428.2 |
| Mean read quality |
11.5 |
| Median read length |
3,382.0 |
| Median read quality |
12.9 |
| Number of reads |
491,836.0 |
| Read length N50 |
3,733.0 |
| STDEV read length |
1,153.6 |
| Total bases |
1,686,094,552.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
491836 (100.0%) 1686.1Mb |
| >Q7 |
490674 (99.8%) 1682.6Mb |
| >Q10 |
426951 (86.8%) 1481.1Mb |
| >Q12 |
319178 (64.9%) 1124.0Mb |
| >Q15 |
45442 (9.2%) 165.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.3 (259) |
| 2 |
18.5 (926) |
| 3 |
18.4 (248) |
| 4 |
18.3 (3651) |
| 5 |
18.2 (3224) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15312 (5.9) |
| 2 |
14030 (6.1) |
| 3 |
12634 (14.0) |
| 4 |
10872 (14.9) |
| 5 |
9982 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot