NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,094.6 |
| Mean read quality |
10.6 |
| Median read length |
3,192.0 |
| Median read quality |
12.9 |
| Number of reads |
857.0 |
| Read length N50 |
4,017.0 |
| STDEV read length |
1,728.7 |
| Total bases |
2,652,085.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
857 (100.0%) 2.7Mb |
| >Q7 |
840 (98.0%) 2.6Mb |
| >Q10 |
628 (73.3%) 2.3Mb |
| >Q12 |
529 (61.7%) 2.0Mb |
| >Q15 |
86 (10.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (4219) |
| 2 |
16.8 (3000) |
| 3 |
16.7 (3573) |
| 4 |
16.7 (6463) |
| 5 |
16.4 (3009) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8609 (12.2) |
| 2 |
8537 (11.6) |
| 3 |
7725 (12.9) |
| 4 |
7470 (7.1) |
| 5 |
7400 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot