NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,255.1 |
| Mean read quality |
11.7 |
| Median read length |
4,193.0 |
| Median read quality |
13.0 |
| Number of reads |
80,925.0 |
| Read length N50 |
4,619.0 |
| STDEV read length |
1,429.7 |
| Total bases |
344,346,293.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
80925 (100.0%) 344.3Mb |
| >Q7 |
80713 (99.7%) 343.6Mb |
| >Q10 |
72169 (89.2%) 309.4Mb |
| >Q12 |
55630 (68.7%) 241.0Mb |
| >Q15 |
5141 (6.4%) 22.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (4695) |
| 2 |
17.7 (3124) |
| 3 |
17.7 (7499) |
| 4 |
17.5 (3274) |
| 5 |
17.5 (3000) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16658 (9.3) |
| 2 |
12713 (10.7) |
| 3 |
12693 (9.6) |
| 4 |
12659 (12.4) |
| 5 |
12585 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot