NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,516.3 |
| Mean read quality |
11.7 |
| Median read length |
3,392.0 |
| Median read quality |
13.0 |
| Number of reads |
27,564.0 |
| Read length N50 |
3,807.0 |
| STDEV read length |
1,296.8 |
| Total bases |
96,924,627.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
27564 (100.0%) 96.9Mb |
| >Q7 |
27484 (99.7%) 96.8Mb |
| >Q10 |
24586 (89.2%) 87.5Mb |
| >Q12 |
19087 (69.2%) 68.4Mb |
| >Q15 |
2457 (8.9%) 8.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (4863) |
| 2 |
18.6 (3388) |
| 3 |
18.4 (4846) |
| 4 |
17.8 (4853) |
| 5 |
17.7 (3253) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10317 (9.0) |
| 2 |
9247 (11.8) |
| 3 |
9187 (12.4) |
| 4 |
8919 (13.7) |
| 5 |
8601 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot