NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,216.1 |
| Mean read quality |
11.1 |
| Median read length |
3,157.0 |
| Median read quality |
12.3 |
| Number of reads |
36,451.0 |
| Read length N50 |
3,456.0 |
| STDEV read length |
1,095.5 |
| Total bases |
117,228,320.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
36451 (100.0%) 117.2Mb |
| >Q7 |
36451 (100.0%) 117.2Mb |
| >Q10 |
30530 (83.8%) 101.0Mb |
| >Q12 |
20179 (55.4%) 67.4Mb |
| >Q15 |
1044 (2.9%) 3.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (3206) |
| 2 |
17.5 (2727) |
| 3 |
17.4 (2673) |
| 4 |
17.3 (4934) |
| 5 |
17.3 (2645) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11691 (14.0) |
| 2 |
10813 (10.4) |
| 3 |
9917 (7.5) |
| 4 |
9864 (8.6) |
| 5 |
9533 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot