NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,281.3 |
| Mean read quality |
11.7 |
| Median read length |
5,317.0 |
| Median read quality |
12.9 |
| Number of reads |
3,031.0 |
| Read length N50 |
5,827.0 |
| STDEV read length |
1,576.8 |
| Total bases |
16,007,654.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3031 (100.0%) 16.0Mb |
| >Q7 |
3027 (99.9%) 16.0Mb |
| >Q10 |
2709 (89.4%) 14.4Mb |
| >Q12 |
2061 (68.0%) 11.1Mb |
| >Q15 |
127 (4.2%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (3101) |
| 2 |
16.8 (6399) |
| 3 |
16.8 (2461) |
| 4 |
16.2 (2915) |
| 5 |
16.2 (4667) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10237 (11.8) |
| 2 |
10169 (14.7) |
| 3 |
9491 (10.4) |
| 4 |
9460 (13.6) |
| 5 |
9416 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot