NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,728.2 |
| Mean read quality |
11.3 |
| Median read length |
4,711.0 |
| Median read quality |
12.5 |
| Number of reads |
255,015.0 |
| Read length N50 |
5,078.0 |
| STDEV read length |
1,396.1 |
| Total bases |
1,205,769,222.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
255015 (100.0%) 1205.8Mb |
| >Q7 |
254686 (99.9%) 1204.5Mb |
| >Q10 |
224184 (87.9%) 1069.1Mb |
| >Q12 |
158043 (62.0%) 762.8Mb |
| >Q15 |
1423 (0.6%) 6.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (3788) |
| 2 |
16.9 (4112) |
| 3 |
16.7 (3960) |
| 4 |
16.6 (822) |
| 5 |
16.6 (6848) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14640 (9.5) |
| 2 |
13519 (11.2) |
| 3 |
13242 (9.0) |
| 4 |
13006 (8.0) |
| 5 |
12355 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot