NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,672.9 |
| Mean read quality |
6.6 |
| Median read length |
1,478.0 |
| Median read quality |
6.9 |
| Number of reads |
3,927.0 |
| Read length N50 |
2,602.0 |
| STDEV read length |
1,175.8 |
| Total bases |
6,569,550.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3104 (79.0%) 5.5Mb |
| >Q7 |
1915 (48.8%) 4.4Mb |
| >Q10 |
1407 (35.8%) 3.8Mb |
| >Q12 |
978 (24.9%) 2.7Mb |
| >Q15 |
55 (1.4%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (2091) |
| 2 |
16.3 (2460) |
| 3 |
15.9 (3562) |
| 4 |
15.9 (2985) |
| 5 |
15.9 (2390) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9087 (4.7) |
| 2 |
5883 (7.0) |
| 3 |
5726 (6.5) |
| 4 |
5450 (10.1) |
| 5 |
5242 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot