NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,428.8 |
| Mean read quality |
11.0 |
| Median read length |
2,715.0 |
| Median read quality |
12.1 |
| Number of reads |
9,518.0 |
| Read length N50 |
2,976.0 |
| STDEV read length |
1,077.5 |
| Total bases |
23,117,155.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9518 (100.0%) 23.1Mb |
| >Q7 |
9508 (99.9%) 23.1Mb |
| >Q10 |
7657 (80.4%) 20.2Mb |
| >Q12 |
4924 (51.7%) 14.0Mb |
| >Q15 |
780 (8.2%) 2.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (2904) |
| 2 |
17.5 (3611) |
| 3 |
17.2 (3162) |
| 4 |
17.2 (2793) |
| 5 |
17.2 (2501) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7524 (12.9) |
| 2 |
7085 (12.0) |
| 3 |
6804 (14.4) |
| 4 |
6489 (7.9) |
| 5 |
6374 (15.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot