NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,061.1 |
| Mean read quality |
9.6 |
| Median read length |
3,174.0 |
| Median read quality |
10.6 |
| Number of reads |
4,763.0 |
| Read length N50 |
4,151.0 |
| STDEV read length |
1,916.6 |
| Total bases |
14,579,974.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4763 (100.0%) 14.6Mb |
| >Q7 |
4763 (100.0%) 14.6Mb |
| >Q10 |
2828 (59.4%) 10.7Mb |
| >Q12 |
1189 (25.0%) 4.6Mb |
| >Q15 |
2 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.5 (3390) |
| 2 |
15.2 (5239) |
| 3 |
15.0 (2378) |
| 4 |
14.9 (7169) |
| 5 |
14.8 (2148) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9090 (8.2) |
| 2 |
8755 (11.9) |
| 3 |
8517 (12.6) |
| 4 |
8149 (12.4) |
| 5 |
8117 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot