NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,349.0 |
| Mean read quality |
11.2 |
| Median read length |
5,552.0 |
| Median read quality |
12.8 |
| Number of reads |
721.0 |
| Read length N50 |
5,989.0 |
| STDEV read length |
1,911.8 |
| Total bases |
3,856,633.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
721 (100.0%) 3.9Mb |
| >Q7 |
717 (99.4%) 3.8Mb |
| >Q10 |
610 (84.6%) 3.4Mb |
| >Q12 |
465 (64.5%) 2.7Mb |
| >Q15 |
18 (2.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (7274) |
| 2 |
16.0 (6321) |
| 3 |
15.8 (10227) |
| 4 |
15.6 (6230) |
| 5 |
15.3 (10801) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11115 (14.4) |
| 2 |
11068 (11.6) |
| 3 |
10814 (14.5) |
| 4 |
10801 (15.3) |
| 5 |
10552 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot