NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,147.4 |
| Mean read quality |
12.0 |
| Median read length |
4,224.0 |
| Median read quality |
13.1 |
| Number of reads |
126,632.0 |
| Read length N50 |
4,561.0 |
| STDEV read length |
1,211.8 |
| Total bases |
525,189,036.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
126632 (100.0%) 525.2Mb |
| >Q7 |
126558 (99.9%) 524.9Mb |
| >Q10 |
118136 (93.3%) 493.0Mb |
| >Q12 |
90239 (71.3%) 382.4Mb |
| >Q15 |
7883 (6.2%) 34.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.8 (3852) |
| 2 |
17.4 (5215) |
| 3 |
17.4 (5580) |
| 4 |
17.4 (4688) |
| 5 |
17.4 (4413) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12530 (12.9) |
| 2 |
12115 (13.8) |
| 3 |
10770 (12.8) |
| 4 |
10736 (11.5) |
| 5 |
10509 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot