NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,878.5 |
| Mean read quality |
11.4 |
| Median read length |
2,866.0 |
| Median read quality |
12.8 |
| Number of reads |
580,588.0 |
| Read length N50 |
3,119.0 |
| STDEV read length |
926.8 |
| Total bases |
1,671,227,458.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
580588 (100.0%) 1671.2Mb |
| >Q7 |
578686 (99.7%) 1667.0Mb |
| >Q10 |
511495 (88.1%) 1494.7Mb |
| >Q12 |
382242 (65.8%) 1135.3Mb |
| >Q15 |
10818 (1.9%) 32.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (358) |
| 2 |
17.5 (3596) |
| 3 |
17.5 (4113) |
| 4 |
17.3 (3619) |
| 5 |
17.2 (2816) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10435 (12.7) |
| 2 |
9753 (12.1) |
| 3 |
9424 (14.0) |
| 4 |
9080 (10.1) |
| 5 |
9060 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot